Environmental Biotechnology and Bioprocessmodeling (MLJ640)

The course will be divided into the following 4 Modules:

Module 1: Environmental Microbiology.

In this module the course will cover advanced topics in environment microbiology related to microbial  communities the relationships between microorganisms and microbial processes in different environments. In additions this section will also include methods used for the study of microbial communities such as metagenomics.

Module 2: Bioremediation

The bioremediation modules student will cover acclimation, detoxification, sorption, and bioavailability, effect of chemical structure on biodegradation, xenobiotics, cometabolism and application of bioremediation strategies.

Module 3: Oil Reservoir microbiology

This topic covers microbial communities in oil reservoirs, reservoir souring, biocorrosion and biofouling, microbial upgrading of oil and microbial influenced oil recovery.

Module 4: Methods in Environmental microbial biotechnology

This section will involve compulsory laboratory sessions relating to the other 3 modules. In addition the students will learn about the methods used in environmental biotechnology

Knowledge Outcome

Students should gain understanding of the role of microorganisms in their environment and how this knowledge can be used to solve environmental and industrial problems.

Skills Outcome

Students should be able to utilize the knowledge gained on the role and importance of microorganisms in the environment and how the knowledge can be exploited. Students will be able to apply this knowledge in both real life and in a laboratory setting. In addition students will gain some basic environmental microbiology laboratory skills.

General Competency

To build on their prior knowledge of environmental microbiology giving students a deeper understanding of the impact of microorganisms on the environment and how to apply this knowledge in order to utilize microorganisms for bioremediation and in the oil industry.

Environmental Microbiology (MLJ520)

Microbiology (BIO220), Environmental Microbiology (MLJ520), Environmental Process Analysis (MLJ530)

Laboratory Assignments

Students are required to attend a laboratory section of this course relating to methods used in environmental microbial biotechnology. 

Mandatory lab assignments shall be completed at the times and in the groups that are assigned and published on Canvas. Valid absence due to illness or for other reasons must be communicated to the laboratory personnel as soon as possible.  In cases of valid absence, it may be possible to complete the lab assignments at other times, where agreed with the teaching staff. This is not an entitlement. 

Labs must be approved in order to access the course examinations. No resit is offered for the laboratory section. If a student wishes to redo the lab, this can be done next time the subject is taught. 

Fagperson(er)

Coordinator laboratory exercises:

Liv Margareth Aksland

Course coordinator:

Krista Michelle Kaster

Coordinator laboratory exercises:

Hong Lin

Head of Department:

Päivi Annele Teivainen-Lædre

Course teacher:

Ilke Pala Øzkøk

4 hours of lectures a week plus obligatory laboratory exercises 

The course is based primarily on a based on lectures.

Admission to Single Courses at the Faculty of Science and Technology

Exchange programme at Faculty of Science and Technology

Use evaluation forms and/or conversation for students' evaluation of the course and teaching, according to current guidelines

Book Biodegradation and bioremediation Alexander, Martin, San Diego, Calif., Academic Press, XIV, 453 s., cop. 1999, isbn:9780120498611, Book Bioremediation : applied microbial solutions for real-world environmental cleanup Atlas, Ronald M.; Philp, Jim, Washington, D.C., ASM Press, XI, 366 s., c2005, isbn:1555812392, Book Brock biology of microorganisms Madigan, Michael T., Buckley, Daniel H.; Bender, Kelly S.; Sattley, W. Matthew; Stahl, David A.; Brock, Thomas D., Upper Saddle River, New Jersey, Pearson, 1124 sider, [2021], isbn:9781292404790; 1292404795, Book Processes in microbial ecology Kirchman, David L., Oxford, Oxford University Press, XIII, 318 sider, 2018, isbn:9780198789413; 9780198789406, Book Processes in Microbial Ecology Kirchman, David L, Oxford University Press, 1-318, 2012-02-02, isbn:0199586926, read chapters 7,8, 11 and 13. https://bibsys-ur.userservices.exlibrisgroup.com/view/uresolver/47BIBSYS_UBIS/openurl?ctx_enc=info:ofi/enc:UTF-8&ctx_id=10_1&ctx_tim=2019-10-25T12%3A50%3A33IST&ctx_ver=Z39.88-2004&url_ctx_fmt=info:ofi/fmt:kev:mtx:ctx&url_ver=Z39.88-2004&rfr_id=info:sid/primo.exlibrisgroup.com-dawson&req_id=&rft_val_fmt=info:ofi/fmt:kev:mtx:&rft.genre=book&rft.atitle=&rft.jtitle=&rft.btitle=Processes%20in%20Microbial%20Ecology&rft.aulast=&rft.auinit=&rft.auinit1=&rft.auinitm=&rft.ausuffix=&rft.au=Kirchman,%20David%20L&rft.aucorp=&rft.date=2012-02-02&rft.volume=&rft.issue=&rft.part=&rft.quarter=&rft.ssn=&rft.spage=&rft.epage=&rft.pages=1-318&rft.artnum=&rft.issn=&rft.eissn=97801916&rft.isbn=0199586926&rft.sici=&rft.coden=&rft_id=info:doi/10.1093/oso/9780198789406.001.0001&rft.object_id=&rft.eisbn=9780191624216&rft.edition=&rft.pub=Oxford%20University%20Press&rft.place=&rft.series=&rft.stitle=&rft.bici=&rft_id=info:bibcode/&rft_id=info:hdl/&rft_id=info:lccn/&rft_id=info:oclcnum/&rft_id=info:pmid/&rft_id=info:eric/((addata/eric}}&rft_dat=%3Cdawson%3E9780191624216%3C/dawson%3E%3Curl%3E%3C/url%3E,language=eng,view=UBIS&svc_dat=viewit&user_ip=10.16.56.128&req.skin=primo&rft_pqid=EBC886552&rft_galeid=&rft_cupid=&rft_eruid=&rft_nurid=&rft_ingid=View online Book Microbial ecology : fundamentals and applications Atlas, Ronald M., Bartha, Richard, Menlo Park, Calif., Benjamin Cummings, X, 694 s., c1998, isbn:0805306552, Book Petroleum microbiology Ollivier, Bernard; Magot, Michel, Washington, D.C., ASM Press, XI, 365 s., c2005, isbn:1555813275, Video Illumina Sequencing by Synthesis YouTube, https://www.youtube.com/watch?v=fCd6B5HRaZ8View online

The course description is retrieved from FS (Felles studentsystem). Version 1